I'm partial to pen and paper due to the increased flexibility of it. However as I have begun to learn pen testing and now I do malware research pen and paper has many drawbacks.
I need the ability to copy and paste (long urls, data, etc.) Screenshots are a must. It would be nice if it was cross platform and I could sync them. And of course searching which you can't do with pen and paper.
I've tried onenote but it's only windows. Evernote but I didn't like it much. I've used basecamp a little bit but I"m not sure if I like it. I've played with programs like Dradis but that is strickly pen testing. I'd like to use this for my malware research as well.
Does anyone have a good flexibly program for note taking?